PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G243200.1
Common NameB456_009G243200, LOC105769620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 427aa    MW: 47167.2 Da    PI: 9.4987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G243200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05198220223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp Cg+ F   +nL+ H+ + H
  Gorai.009G243200.1 198 SCPECGEIFMKAENLELHQAVrH 220
                         8******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.182197225IPR007087Zinc finger, C2H2
PROSITE patternPS000280197220IPR007087Zinc finger, C2H2
SuperFamilySSF563992.49E-24222425No hitNo description
Gene3DG3DSA:3.90.228.105.0E-18223424IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAGSTHQRKP TMEAYQNQNK WPQKIDKPPS WAVLKGFFFG KYHHRQQEQE EQQKLQPKKK  60
VKKQKQQQKE QVMEETGKKC KKMRCSGSLC SNTKVIHCRP EMASPEVHKK RASFGSFDTS  120
SRSMKAPLRE LNGVAVSSTN SSSLLSVSSA APPASSSAGG SFGGMPFRRF SGCYECKLVV  180
DPLLGISKDP SLRGTICSCP ECGEIFMKAE NLELHQAVRH AVSELGPEDT SKNIVEIIFK  240
SSWLKKQTPI CQIDRILKVQ NTPKTISKFE EYRDSIKSKA TKKHPRCIAD GNELLRFHCT  300
TFACSLGLSG STNLCNTIPK CNVCSIIKNG FKVAQETNGK GILTTATSGK AHDKAAGVED  360
GDYEKRAMLV CRVIAGRVKK NIMEGDNMEE YDSVAGAVGV YSDLDELFVF NPNAILPCFV  420
VIYRGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445830.10.0PREDICTED: uncharacterized protein LOC105769620
TrEMBLA0A0D2UT530.0A0A0D2UT53_G
STRINGVIT_18s0001g03670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.16e-97C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]